Nobel laureate James Watson was attacked yesterday (14 April 2011) whilst giving a lecture at Patras University. Hooded youngsters invaded the lecture theatre crying "racist!". One of them jumped on the stage yielding a stick and attacked elderly Watson. The Nobel laureate escaped unharmed thanks to students and academics who rushed to his rescue.Friday, April 15, 2011
In defense of Watson
Nobel laureate James Watson was attacked yesterday (14 April 2011) whilst giving a lecture at Patras University. Hooded youngsters invaded the lecture theatre crying "racist!". One of them jumped on the stage yielding a stick and attacked elderly Watson. The Nobel laureate escaped unharmed thanks to students and academics who rushed to his rescue.Tuesday, February 8, 2011
How to build a knowledge economy in Greece
Wednesday, October 6, 2010
Whatever happened to Dedalus? (and, by the way, Icarus too)
Monday, September 6, 2010
Looking for Klingsor
Hot chocolate in Mexico City
Hikikomori
Micrographia
The Archive
Etherwave Proxima Q
The nomadic texts
The Mission Diaries I
Wednesday, September 1, 2010
1/137.036
This is the alpha constant, a pure number which determines the structure of atoms in our universe. Had it been more than 4% different it would be impossible to have stable carbon atoms, and therefore there would not be carbon-based life-forms writing blogs and pondering about the mystery of this number.
To get the alpha constant you must multiply the square of the electron charge by 2 pi and then divide the product by the product of the speed of light times the Planck constant. So it is a constant of constants, with the difference that is dimensionless, i.e. id does not have measurement units. If an alien civilization used any other different set of measurement units to describe the same physical constants they would arrive at the same, pure, number.
So why this number? Why this universe so fine-tuned for life? During the long debate about the alpha constant some of the most logical, and at the same time crazy, hypotheses, were (a) that there are infinite number of universes and we just happen to inhabit in the life-friendly one – the “multiple universes hypotheses” and (b) that we inhabit a small part of a much, much, much bigger universe where all kinds of variations of nature’s constants occur – “the multiverse hypothesis”.
In a paper just submitted to Physical Review Letters, a team led by John Webb and Julian King from the University of New South Wales in
Friday, July 16, 2010
Aristotle in a chip
The reemergence of ancient notions in the modern field of bioinformatics
Aristotle, in his zoological opus Historia Animalium (The history of animals), launches into his analysis of the animal kingdom by observing differences and similarities between the species. For example, he observes that bats and birds both have wings, so he surmises that they must be grouped together; like fish and dolphins should. By examining animal anatomy and by comparing features such as number or shape of legs (or absence of legs), wings, types of skin, habitats, etc., Aristotle put together a logically coherent taxonomy of animal life that remained virtually unchallenged until Linnaeus. This idea of comparative anatomy, as systematized by Aristotle, is essentially the study of homology (from the Greek word “hómoios”: “similar”) – i.e. of similarities. The idea flowed naturally from Aristotelian Logic and in particular his theory of syllogisms: is A equals B and C equals B, then A equals C. If one replaces “equal” with “similar”, then homology is the logical corollary of equality.
Ancient Greek, and by consequence Medieval European, homology was explained by ideal archetypes, by timeless blueprints designed by a heavenly architect, and into which the objects of perceived reality were molded.
One and a half centuries after the publication of Darwin’s Origin of Species the modern brethren of his Victorian genius spend much of their time, alas not aboard adventurous sailing yachts roaming the southern seas, but in front of computer monitors applying an ever-expanding arsenal of mathematical and computational techniques in the analysis of living organisms.
One of the most significant application areas of bioinformatics – as this contemporary fusion of biology, computer science and mathematics is termed – is in the study of complex molecules, such as proteins.
Proteins, the building blocks of cells, have structures made up from their particular sequence of aminoacids (which are, in turn, the building blocks of proteins); the way these amino acid molecules unfold in three-dimensional space is what determines the function of a protein. So it is very important for biologists to be able to predict the structure of proteins. What we know is that a protein structure is generally determined by the sequence of the gene that codes for it. And here is where the notion of homology reemerges. It is used to predict the function of a gene. If the function of gene A, whose function is known, is homologous to the sequence of gene B, whose function is unknown, one could infer that B may share A’s function. In a technique called homology modeling, this information is used to predict the structure of a protein once the structure of a homologous protein is known.
Caveat Lector: biologists beware! Meddling with mathematicians who are, secretly, Platonic devotees, may one day lead you to the defense of positivist naturalism against subversive philosophical attacks from the musical spheres of perfect, ideal, proteins-out-there. Ancient ideas, as you should know, are very hard to beat.
Monday, July 12, 2010
The Word Machine of Lagado

Jonathan Swift published the first edition of Gulliver’s Travels in 1726 and since then it has never been out of print. In Book III, Gulliver is abandoned by pirates on the continent of Balnibarbi. After a visit to the flying
The word machine of Lagado has fascinated computer dreamers too. It is the original idea behind Hilbert’s Ur-algorithm – a logical contraption that, should humanity come to an end, can recreate by itself, automatically, the works and knowledge that was lost. The machine that can write any book. The mathematical formula that can prove every theorem. Thanks to Gödel we now know that such a machine, or algorithm, is impossible to construct. But the fascination with the word machine of Lagado is too strong to let go. Like a childhood dream it returns again and again to haunt the adult life with nostalgia. What if there is a way round Godel’s incompleteness theorem? What if there exists, somewhere in an infinite multiverse, a word machine like the one dreamt by Swift? What if our thoughts are written in the pages of its infinite books?
Saturday, May 30, 2009
Ida, the “missing” link

“Ida”, a 47-million-year-old primate skeleton has been unveiled amid much fanfare and a flurry of well-orchestrated media announcements. It coincided with the release of a book and a television documentary, both of which had been prepared under a cloak of secrecy.
For a fact, the fossil is a paleontologist’s dream come true. It belongs to a species named Darwinius Masillae (after Darwin and the place of its discovery
Behind the media hubbub lays a bitter scientific trench war with regards to human evolution. Follow the tree of human evolution backwards and when you reach around 6 million years into the past you are going to meet the common ancestor of humans and chimpanzees. Go further back several more million years and you arrive at a big enigma: when did the earliest “anthropoid” primates (who ended up as apes, monkeys and humans) split from their even earlier ancestors who were lemur-like? The question is paramount to scientists because lemurs and anthropoids differ in many significant ways. For example, lemurs have claws and anthropoids have fingernails.
The way scientists build a case for a species being the ancestor of another is by looking at certain anatomical characteristics that are common to the two species to the exclusion of others. Darwinius is linked to anthropoids on the basis of the absence of two common lemur characteristics: a tooth comb (a set of forward-facing incisors) and a grooming claw (a special claw on the foot). Since anthropoids lack such traits too, the scientists surmise that Ida is closely connected to them. And yet, the analysis published in their paper leaves many questions unanswered. Press releases subtly claim that 95% of the evidence points out that the scientists are right. But this claim is ludicrously unscientific. The same percentage of evidence - and more – used to confirm the Ptolemaic theory that the Sun revolved around Earth; and yet the theory was completely wrong. Some critics contend that Darwinius is not an adapid at all, but a convergent subspecies of tarsier. Anyway, whatever species she may turn out to be given a more scholastic analysis, could Ida be the “missing link”?
Presumably, the marketing gurus who sold the story to the media transpired that this was an excellent way to transgress the arcane scientific debates of human evolution, extract Ida from the obscurity of science journals and science meetings, and communicate her story to the public. At first glance, this may appear imaginative, commendable even. Moreover, one might argue that using a bad cliché to talk good science is sometimes de rigueur. As Jørn H. Hurum, the scientist at the
Published in the
Friday, May 15, 2009
Eternity
A conversation with Nikos Prantzos
When trying to convey the feeling of eternity Nikos Prantzos likes to quote an ancient Nordic myth. “In a distant country stands an enormous rock in the shape of a cube, each of its sides measuring one hundred kilometers. Once every ten thousand years a small bird flies over the rock and for a few moments rubs its beak on it. When the rock has disappeared, completely worn away by the rubbing of the beak, one day in eternity will have completed.” Prantzos has calculated how long this will take; 1030 years (1 with 30 zeros following). But as the future of our universe goes, this mind-bending timescale is but a mere moment. Protons, the subatomic particles at the nuclei of every chemical element will disappear in 1033 years. Black holes, having gulped whatever remaining matter, will evaporate too in 1066 years. For an astrophysicist such as Prantzos the cosmological future is eternity raised to the power of eternity many times over.
Born in
So since the universe is destined to end with a pathetic whimper, what could be the meaning of life? If the ultimate future is dark nothingness, why bother with anything? “The vastness of the timescales involved,” says Prantzos, “is such that it leaves plenty of time to us - or to any future civilization - to consider and construct not one but literally millions of interesting futures. Along the way, meaning and purpose will be redefined time and again”.
Of course, in an ever expanding Universe, with temperatures dropping everywhere to nearly absolute zero and matter decaying into elementary particles and diluted radiation, indefinite survival appears impossible. And this is true not only for biological creatures such as us made of flesh and blood, but also of robots made of bolts and nuts. Nevertheless, Prantzos is agnostically optimistic. He contends that one should not forget that our present understanding of the Universe, based on the physics of the 20th century, is incomplete. “New theories will certainly emerge in the decades and centuries to come, perhaps offering us different and more optimistic perspectives for the far future of intelligence in the Cosmos”.
And if we earthlings don’t manage to figure things out someone else might. Which brings in the centuries-old, and ever-fascinating, question of life and intelligence elsewhere in the Universe.
Science has firmly established that the laws of physics – and therefore chemistry - are the same everywhere in the Universe. However, even if biology is essentially chemistry, biological evolution depends on many unpredictable conditions: it was the disappearance of dinosaurs following an asteroid hitting Earth 65 million years ago that paved the way to mammals and thereof allowed the ascent of humans. Prantzos points out that evolution from bacteria towards high intelligence, and further on to a technological civilization, looks like an extremely improbable event. He is not the first to doubt the existence of ETs. In 1948, the famous Italian physicist Enrico Fermi highlighted the fact that no convincing trace of an extraterrestrial visit to Earth has ever been found, despite the fact that there are billions of stars much older than the Sun in our Galaxy. Pranztos notes that “Fermi interpreted that absence of evidence as evidence that civilizations undergo a nuclear holocaust just before mastering space travel.” He contends that if there were indeed hundreds of civilizations in our Galaxy, it is improbable that all of them blew up or failed to reach us for some reason. “We should therefore get familiar with the idea that we are probably alone in the Galaxy”, he adds. And yet he remains a supporter of SETI (The Search for Extraterrestrial Intelligence) who look for extraterrestrial signals from space. “Despite its small chances of success, the rewards would be enormous if a single such signal is ever detected”, he says.
Aliens may not be in Prantzos mind when he looks at the stars, but space travel is. As a young boy marveling at the night sky over the
What appeared an easy feat in the 60s looks much harder today. The harshness of space environment makes problematic all plans for long term exploration of space by humans. The construction of adequate protecting shelters in space will require considerable efforts and resources. Furthermore, access to space is very costly because of the gravitational attraction of our planet. Until today rockets, using chemical propulsion and design principles invented by the Chinese centuries ago, remain humanity’s only means to escape Earth. Prantzos hopes that a new generation of propulsion technologies, such as nuclear, ionic, antimatter, or solar sail pushed by Sun's radiation, will provide alternative and faster ways to visit our nearest worlds, such the Moon and Mars.
Prantzos is particularly fond of manned missions into space and a believer that investing in them is a sound decision for the future of humanity. “The situation of our planet obviously requires all of our attention today”, he says. “We should try to heal the wounds of Mother Earth before embarking to ambitious programs of space travel and colonization of space. However, this does not preclude a reasonable step-by-step, long term program of space exploration. Moon, Mars and the asteroids are the obvious targets of such a program, at least for the 21st century. All major space agencies have interesting projects for those targets. I don’t think that funding issues are prohibitive. When compared to the cost of the
Published in the Athens News on May 15th
Friday, May 1, 2009
A traveler’s companion to Mars

In 1894 a wealthy Bostonian by the name Percival Lowell built an astronomical observatory in Arizona dedicated to learning more about enigmatic Mars. It was the time of canal-building on Earth, with the French having completed Suez a few years earlier and the Americans getting busy on cutting across the Isthmus of Panama. Lowell, saw canals on Mars too. Inspired by Darwin, he imagined life on Mars spawning and evolving over time into intelligent creatures who built planet-wide aqueducts to bring water from the poles to the equatorial deserts. He saw lush areas of cultivation, and he imagined cities and people not very much unlike us. Lowell’s ideas, published in his widely-read book Mars the Abode of Life, culminated humanity’s timeless fascination with the red planet with a profound conclusion: that we are not alone in the universe. Indeed, the intelligent beings who presumably constructed those irrigation marvels were but a relatively small leap across the dark sea of space. H.G Wells, penned The War of the Worlds by borrowing heavily on Lowell’s ideas, if only to illustrate what bad neighbors can do to each other. At the dawn of the 20th century Earth was abuzz with Mars excitement.
Lowell had put together a wonderful theory by drawing on the latest science. Alas, the theory was completely wrong. There are no Martians. Several fly-bys by spacecrafts, beginning with Mariner 4 in 1964, and not a few landings by robotic rovers, have ascertained that. There are no canals either. But there are plenty of fascinating and intriguing features to explore. There are dried riverbeds and meandering streams, wide landforms that resemble lakes, gullies that slope down mountainsides as if sculptured by torrential rains, volcanoes and underwater ice. There are telltale signs aplenty that once upon a time Mars was a completely different world. In fact, many scientists believe that Mars used to be covered with oceans and had an atmosphere and a benign climate similar to Earth’s. Then about 3.5 billion years ago a catastrophic event turned the planet into a cold and barren desert. That is why the quest for Martian life - albeit of a more humble, bacterial nature - has not ceased. It is possible that unicellular organisms still exist, buried deep under the surface. Their discovery would be of tremendous significance, for they would provide conclusive evidence that life is not a local, earthly phenomenon, but ubiquitous, something that might permeate the cosmos.
The list of enigmas that scientists draw each time they push the Mars exploration agenda is long. Our planetary neighbor is similar to Earth in many more interesting ways. Although half its size it has roughly the same land area. Martian days (called “sols”) are only a 37 minutes longer than our 24 hours. A tilted axis of rotation creates seasons; summers, falls, winters and springs follow each other in a year that is twice as long, as Mars takes 699 “sols” to journey once around the Sun. The Sun rises in the East and sets in the West. Both planetary siblings have polar icecaps. Why then has the Red Planet met such a disastrous fate? What catastrophe happened all those billion years ago? What can we learn about its climate that can help us understand the climate here on Earth?
Mars may be a must-go destination for other reasons too. On March 31st six volunteers locked themselves inside a hermetically living space in a laboratory in Moscow. For the ensuing 105 days, they will be eating dehydrated food and breathe recycled air. Their communication with the outside world will have a twenty-minute delay. Simulated emergencies (e.g. equipment failure), as well as real ones will keep them on their toes, as will a number of scientific experiments that they will have to perform. Their every move and vital sign will be monitored around the clock. It sounds like the ultimate version of “Big Brother” but is in fact a simulation experiment for a human mission to Mars. If a real mission ever sets off, the astronauts will have to deal with the physiological and psychological aspects of being confined in a tin can hurled into space, bombarded by cosmic radiation, and sailing towards another world at a pace very unlike the zapping speeds sci-fi films have us accustomed to. The trip to Mars may take up to eight long months.
Once those future space pioneers get there however, there will have little to celebrate for. Mars is not a friendly place. Temperatures may vary from -870C at night to a “balmy” -250C in the afternoon. The atmosphere is mostly carbon dioxide and the air pressure less than 1% that of Earth’s. A space suit must be worn when walking about. But walking will be easy because the gravity is only one third that of our world. The sky would look bright pinkish because of the fine reddish dust blown aloft by Martial winds. Dustdevils roam the surface like wandering phantoms and kick up so much dust that visibility often gets close to zero. At sunset, with the winds subsiding, there may be some scattered clouds in the sky, and as our astronauts prepare for their night rest they may momentarily look up to the bright, tinkling stars, and easily recognize the same constellations, with one difference. Somewhere over the horizon a tiny bright blue ball of light will be gleaming: Earth.
There are many who doubt the usefulness, let alone wisdom, of such a risky and costly undertaking as a manned mission to Mars. To sustain a permanent base in Mars would be even more perilous. But as the Moscow experiment shows danger, and discomfort, seem to have a strange appeal to human nature, one not to be underestimated. There will always be people ready to take the challenge, no matter how impossible it may seem. The benefits are almost impossible to estimate. We will never know what there is to gain from landing humans on Mars unless we do it. For now we have at least two good reasons to attempt it. One has to do with pushing the technological envelope of space flight further. For the past sixty years very little progress has been made in space propulsion. A human mission to Mars will require a new generation of rockets and fuels; an eight-month trip is just too long and has to be cut back drastically. New technologies will have to be developed to ensure the safety of the mission. The second reason to send people instead of robots is space colonization, an agenda pushed forward by the Mars Society, a non-profit organization which has already designed the “planetary flag” of Mars, while undertaking some serious scientific work too. Establishing permanent human settlements on Mars will be a step-wise project which may take several centuries, unless an as-yet unimagined innovation comes along and revolutionizes space travel. And if living in a pressurized building and walking around in a spacesuit is not your idea of a good life, there is always terraforming. Scientists believe that given enough knowledge and time, we could pollinate the Martian atmosphere and soil with oxygen-producing organisms which will make Mars a more hospitable planet. For romantics and visionaries, it would be the “unwinding” of the ancient catastrophe and the making of a space Utopia, with canals and all. Perhaps then Lowell, as he peered into his telescope under the Arizona sky, he saw a revelation of the future. Perhaps, in that visionary future, the Martians will be our descendants.
